YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40644904, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQGCLCWRG CCDLKTSFPW VTNSRRLWMN CIGCNPVWRL RAWGCLAGGT TLMVIWLFWL  60
   61 LRSVPGGAPA PQPTLTILIW HWPFTNRSPE LSSDTCTRYG MASCHLSANR SLLASADAVV 120
  121 FHHRELQTRH SRLPLDQRPH GQPWVWATME SPSNTHGLRH FRGIFNWVLS YRRDSDIFVP 180
  181 YGRLEPFSGP TPPLPAKSRM AAWVVSNFQE RQQRAKLYRQ LAPHLKVDVF GRASGRPLCP 240
  241 NCLLPTVARY RFYLSFENSQ HRDYITEKFW RNALAAGAVP VVLGPPRTTY EAFVPPDAFI 300
  301 HVDDFSSARE LAVFLVSMNE SRYRGFFAWR DRLRVRLLND WRERFCTICA RYPYLPRSQV 360
  361 YEDLESWFQA

Type	Start	End	Confidence
Cytoplasmic	1	39	0.86
Transmembrane Helix	40	60	0.89
Non-Cytoplasmic	61	370	0.82