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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: S4A8_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAGSNEPDG VLSYQRPDEE AVVDQGGTST ILNIHYEKEE LEGHRTLYVG VRMPLGRQSH  60
   61 RHHRTHGQKH RRRGGRGKGA SQGEEGLEAS AHDTPSQRVQ FILGTEEDEE HVPHELFTEL 120
  121 DEICMKEGEE AEWKETARWL KFEEDVEDGG ERWSKPYVAT LSLHSLFELR SCLINGSVLL 180
  181 DMRASSIEEI SDLILDQQEL LRDLSDSVRV KVREALLKKH HHQNEKKRNN LIPIVRSFAE 240
  241 VGKKQSDPHS MDRDGQTVSP QSAPATNLEV KNGVNCEHSP VDLSKADLHF MKKIPAGAEA 300
  301 SNVLVGEVDT LDRPIVAFVR LSPAVLLSGL TEVPIPTRFL FILLGPVGKG QQYHEIGRSM 360
  361 ATIMTDEIFH DVAYKAKERD DLLAGIDEFL DQVTVLPPGE WDPSIRIEPP KNVPSQEKRK 420
  421 MPGVPNGNIC HVEPEPHGGH SGPELERTGR LQCLASFLFL YCACMSPVIT FGGLLGEATE 480
  481 GRISAIESLF GASMTGIAYS LFAGQPLTIL GSTGPVLVFE KILFKFCKDY ALSYLSLRAC 540
  541 IGLWTAFLCI VLVATDASSL VCYITRFTEE AFASLICIIF IYEAIEKLIH LAETYPIHMH 600
  601 SQLDHLSLYY CRCALPENPN NHTLQYWKEH SIPTADVNWA NLTVSECQEM HGEFIGSACG 660
  661 HHGPYTPDVL FWSCILFFAT FIVSSTLKTF KTSRYFPTRV RSTVSDFAVF LTIFTMVILD 720
  721 FLIGVPSPKL QVPSVFKPTR DDRGWFISPI GPNPWWTVIA AIIPALLCTI LIFMDQQITA 780
  781 VIINRKEHKL KKGCGYHLDL LVVAIMLGVC SLMGLPWFVA ATVLSITHVN SLKLESECSA 840
  841 PGEQPKFLGI REQRVTGLMI FVLMGCSVFM TAVLKFIPMP VLYGVFLYMG VSSLQGIQFF 900
  901 DRLKLFGMPA KHQPDFIYLR HVPLRKVHLF TLVQLTCLVL LWVIKASPAA IVFPMMVLAL 960
  961 VFVRKVMDLC FSKRELSWLD DLMPESKKKK LDDAKKKEEE EEAEKMLDIG GDKFPLESRK1020
 1021 LLSSPGKNNS FRCDPSEINI SDEMPKTTVW KALSINSGNT KEKSPFN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle