YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38197404
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVHTEGPT TERTPLLSAT PGPHADLKVN FVAGAVEPCK AAALERLLWR ACRGFLIASF  60
   61 KETEGQLEDP VTGEPATWMT FVISYWGEQI GQKVRKITDC FHCHVFPYLE QEEARLRTLQ 120
  121 QLQQQSQELQ EVLGETERFL SQVLGRVQQL LPPGQVQIRK MKAVYLTLNQ CSVNTTHKCL 180
  181 IAEVWCATRD LPTVQQALQS GSSEEGVSAV AHRIPCQDMP PTLIRTNRFT SSFQGIVDAY 240
  241 GVGRYREVNP APYTIITFPF LFAVMFGDVG HGLLMFLFAL AMVLTENQPA VKTTQNEIWQ 300
  301 TFFGGRYLLL LMGLFSIYTG FIYNECFSRA TTIFPSGWSV AAMANQSGWS DEYLSQHPML 360
  361 TLNPNITGVF LGPYPFGIDP IWSLATNHLS FLNSFKMKMS VILGVTHMAF GVFLSIFNHV 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	253	0.74
Transmembrane Helix	254	281	0.78
Non-Cytoplasmic	282	302	0.67
Transmembrane Helix	303	322	0.92
Cytoplasmic	323	329	0.56
Transmembrane Helix	330	349	0.56
Non-Cytoplasmic	350	365	0.58
Transmembrane Helix	366	386	0.62
Cytoplasmic	387	398	0.63
Transmembrane Helix	399	417	0.94
Non-Cytoplasmic	418	420	0.63