YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RDH10_RAT
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIVVEFFLV TFKVLWAFVL AAARWLVRPK EKSVAGQVCL ITGAGSGLGR LFALEFARRR  60
   61 ALLVLWDINT QSNEETAGMV RHIYRDLEAA DAAALQAGNG EEEILPPCNL QVFTYTCDVG 120
  121 KRENVYLTAE RVRKEVGEVS VLVNNAGVVS GHHLLECPDE LIERTMMVNC HAHFWTTKAF 180
  181 LPTMLEINHG HIVTVASSLG LFSTAGVEDY CASKFGVVGF HESLSHELKA AEKDGIKTTL 240
  241 VCPYLVDTGM FRGCRIRKEI EPFLPPLKPD YCVKQAMKAI LTDQPMICTP RLMYIVTFMK 300
  301 SILPFEAVVC MYRFLGADKC MYPFIAQRKQ ATNNNEAKNG I

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.49
Transmembrane Helix	7	27	0.79
Cytoplasmic	28	33	0.48
Transmembrane Helix	34	54	0.79
Non-Cytoplasmic	55	341	0.64