YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3219176, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLELRHRGGC PGPGGAGTPP PREGEAAGGD HETESTSDKE TDIDDRYGDL DARGDSDVPE  60
   61 VPPSSDRTPE ILKKALSGLS SRWKNWWIRG ILTLTMISLF FLIIYMGSFM LMLLVLGIQV 120
  121 KCFQEIITIG YRVYHSYDLP WFRTLSWYFL LCVNYFFYGE TVADYFATFV QKEEQLQFLI 180
  181 RYHRFISFAL YLAGFCMFVL SLVKKHYRLQ FYMFAWTHVT LLITVTQSHL VIQNLFEGMI 240
  241 WFLVPISSVI CNDITAYLFG FFFGRTPLIK LSPKKTWEGF IGGFFSTVIF GFIAAYVLSK 300
  301 YQYFVCPVEY RSDVNSFVTE CEPSEVFQLQ NYSLPPFLQA VLSRETVSLY PFQIHSIALS 360
  361 TFASLIGPFG GFFASGFKRA FKIKDFANTI PGHGGIMDRF DCQYLMATFV HVYITSFIRG 420
  421 PNPSKVLQQL LVLQPEQQLN IYRTLKIHLT EKGILQPTWK V

Type	Start	End	Confidence
Cytoplasmic	1	85	0.91
Transmembrane Helix	86	106	0.90
Non-Cytoplasmic	107	111	0.56
Transmembrane Helix	112	134	0.58
Cytoplasmic	135	143	0.52
Transmembrane Helix	144	159	0.74
Non-Cytoplasmic	160	184	0.76
Transmembrane Helix	185	203	0.95
Cytoplasmic	204	211	0.79
Transmembrane Helix	212	232	0.86
Non-Cytoplasmic	233	239	0.85
Transmembrane Helix	240	263	0.90
Cytoplasmic	264	276	0.90
Transmembrane Helix	277	298	0.91
Non-Cytoplasmic	299	353	0.97
Transmembrane Helix	354	377	0.87
Cytoplasmic	378	461	0.89