YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S29A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.94
Transmembrane Helix	13	33	0.94
Non-Cytoplasmic	34	77	0.94
Transmembrane Helix	78	102	0.86
Cytoplasmic	103	109	0.90
Transmembrane Helix	110	130	0.93
Non-Cytoplasmic	131	141	0.74
Transmembrane Helix	142	168	0.78
Cytoplasmic	169	175	0.78
Transmembrane Helix	176	198	0.87
Non-Cytoplasmic	199	204	0.84
Transmembrane Helix	205	226	0.94
Cytoplasmic	227	287	0.96
Transmembrane Helix	288	310	0.92
Non-Cytoplasmic	311	326	0.87
Transmembrane Helix	327	345	0.89
Cytoplasmic	346	360	0.83
Transmembrane Helix	361	381	0.88
Non-Cytoplasmic	382	395	0.81
Transmembrane Helix	396	418	0.91
Cytoplasmic	419	431	0.86
Transmembrane Helix	432	453	0.92
Non-Cytoplasmic	454	457	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSHQPQDR YKAVWLIFFV LGLGTLLPWN FFITATQYFT SRLNTSQNIS LVTNQSCEST  60
   61 EALADPSVSL PARSSLSAIF NNVMTLCAML PLLIFTCLNS FLHQKVSQSL RILGSLLAIL 120
  121 LVFLVTATLV KVQMDALSFF IITMIKIVLI NSFGAILQAS LFGLAGVLPA NYTAPIMSGQ 180
  181 GLAGFFTSVA MICAVASGSK LSESAFGYFI TACAVVILAI LCYLALPWME FYRHYLQLNL 240
  241 AGPAEQETKL DLISEGEEPR GGREESGVPG PNSLPANRNQ SIKAILKSIW VLALSVCFIF 300
  301 TVTIGLFPAV TAEVESSIAG TSPWKNCYFI PVACFLNFNV FDWLGRSLTA ICMWPGQDSR 360
  361 WLPVLVACRV VFIPLLMLCN VKQHHYLPSL FKHDVWFITF MAAFAFSNGY LASLCMCFGP 420
  421 KKVKPAEAET AGNIMSFFLC LGLALGAVLS FLLRALV