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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40789247, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.50
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYSRKAAQD PGASCSLSCS SQPGRQGAAS STXSIPEEAK HGTFVGRIAQ DLGLELTELV  60
   61 PRLFRVASKD RGDLLEVNLQ NGILFVNSRI DREELCGRSA ECSIHLEVIV DRPLQVFHVE 120
  121 VEVKDINDNP PVFPETNKNI VIAESRPPET RFPLDGASDA DIGINSALTY RLDPSDYFAL 180
  181 ATQNNRERPS SLSLVLKKSL DREEIQEHSL LLTASDGGKP ELTGTVQLLI TILDVNDNAP 240
  241 EFDRFVYRVR VLEDVFNGTL VINLNATDPD EGTNGDIIYS FRRPVSPAVV HAFNIDPNSG 300
  301 EVRTKGLLDF EEIKLYEIPV EAVDKGNIPM TGHCTLLVEV LDVNDNAPEV TITSLSLPVK 360
  361 EDAQPSTVIA LVSVSDRDSG DNGQVTCSLT PHLPFKLVST FKNYYSLVLD SALDRETTAD 420
  421 YKVVVTARDG GSPSLWATAS VSVEVADVND NVPVFAQPEY TVFVKENNPP GAHIFTVSAV 480
  481 DTDAQENALV SYSLVERRVG ERLLSSYVSV HAESGKVFAL QPLDHEELEL LQFQVSARDA 540
  541 GVPALGSNVT LQVFVLDEND NVPTLLPHRA VGAGGAVSEL VPRSVGSGHV VAKVRAVDAD 600
  601 SGYNAWLSYE LQLAAGAMSS PFRVGLYTGE ISTTRALDEA DAPRQRLLVL VKDHGEPALT 660
  661 ATATVLVSLV ENGQAPKISS LASESIASSE ASLVTVNVYL IIAICAVSSL LVLTLLLYTA 720
  721 LRCSARPING ACVPGKPMLV CSSAVGSWSY SQQRRQRVCS GEGPPKTDLM AFSPSLPPVL 780
  781 GSAEDTCQRE RQVEHLKEPR QPNPDWRYSA SLRAGMHSSV HLEEAGILRA GPGGPDQQWP 840
  841 TVSSATPEPE AGEVSPPVGA GVNSNSWTFK YGPGNPKQPG PGELPDKFII PGSPAIISIR 900
  901 QESANNQIDK SDFITFGKKE ETKKKKKKKK GNKTQEKKEK GNSTTDNSDQ 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle