YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMGO2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRFHTLPT LPRAVKPGCR ELLCLLVIAV MVSPSSSGLC PTACICATDI VSCTNKNLSK  60
   61 VPGNLFRLIK RLDLSYNRIG LLDADWIPVS FVKLSTLIVR HNNITSISTG SFSTTPNLKC 120
  121 LDLSSNRLKS VKSAMFQELK VLEVLLLYNN HISYLDPAAF GGLSHLQKLY LSGNFLTKFP 180
  181 MDLYVGRFKL ADLTFLDVSY NQIASIPMHH INLVPGKQLR GIFLHGNPFV CDCSLYSLLT 240
  241 FWYRRHFNSV TDFKHDYTCR LWLDSRHSHQ LLLLQDSFLN CSHSVINGSF HALGFIHEAQ 300
  301 VGERAIVHCD GKTGNGNTDF IWVGPDNRLL EPDKDTGNFR VFYNGSLVIE NPGFEDAGVY 360
  361 SCIAMNRQRL LNETVDIMIN VSNFTINRSH HAHEAFNTAF TTLAACVVSI VLVLLYLYLT 420
  421 PCPCKCRDKR QKNALNQSNA HSSILSPGPT RDASAEDRKA GKRVVFLEPL KDPAVGQNGK 480
  481 VKLVPSKTVI AEGILKSSRA KSDSDSVNSV FSDTPFVAST

Type	Start	End	Confidence
Signal Peptide	1	38	0.99
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	397	0.99
Transmembrane Helix	398	420	0.80
Cytoplasmic	421	520	0.84