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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|34328534, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAARGLCFF LSLCALCSCA TRKYYLGAVE LPWDYVSGGA SGAQRSDSRF PPGTPAPSAH  60
   61 VVHTKTVFVE YMDRFFHTAK PRPLWMGLLG PTIWTEVHDT VVITLKNMAS HPVSLHAVGM 120
  121 SFWKASEGAA YDDHSSPAEK DDDKVLPGES HTYAWQVLGE SGPMASDPPC LTYAYLSHVD 180
  181 LVRDLNSGLV GALLVCKEGR LSAERTRMPP HFVLLFAVFD EGRSWHAATR DPASTEAQPT 240
  241 VHTVNGYTNR TLPGLTGCRG TSVYWHVMAV GTTPDIHSIL LEGHTFSVRS HRQASLEISP 300
  301 MTLLTAQTWL MDLGRFLLFC HISSHRHGGM EAYVQVDNCP EAPQGQGKRD EDTEDYDDLD 360
  361 SEMDVFTWDP DAAPFVQVRS AAKRHPKTWV HYIAAEEGDW DYAPAAATLE DGSLRNRYLG 420
  421 RGPGRIGSKY KKVRFVAYTD GTFHTREATP REAGLLGPLL YGEVGDSLLI VFKNRASRAY 480
  481 NIHPHGIRDV GAVHAGRLPR GVKHVKDLPI RPGETFKYRW TLTAEDGPAR SDARCVTRYY 540
  541 ASAVDPERDL ASGLIGPLLI CCKESVDQRG NQMMSDERNV ILFSVFDENR SWYISENMRR 600
  601 FLPDEAHVQL QDPEFEASNL MHSINGYVFD GLELRVCLHE VAAWHVLSVG AQTDFLSVFF 660
  661 SGHTFRHRAV YADTLTVFPH SGVTVFMSMD NPGVWVLGCH NPDFRESGMT ALLKVSSCDE 720
  721 GVSDYYGETY EGVLAPLAND NAVDPRSFSQ NSNHLHSRKK KSNTPMRFPL SHPTQHGSFW 780
  781 SDSQGDVHDA VHRAHSPAAA HSNEGPAEAA QLEPKPHPGE KMALPPSWLR AKRSLVTTME 840
  841 AKRKKLDLQV QVSGLPDDRT TAVVAPDDPM AACKKAGSSG FPDESSPAAL GKKMYPRIRP 900
  901 HGPLSIIEGN RDSNSSDSTL MYRLGSPPGD ATSWTENRRG LGEKRSHRVA FLARGNTLLS 960
  961 DVDEKSHAPG PTSVGNSTAA VQDTILEICS EILEVTPPIH DRILSDKSAT YLRPHRTPDR1020
 1021 ITSTERKDIR HEKDGDLVPQ DADDTSAPFS EAPFLSESTD WLKEANGDNS AKPEQEPSPE1080
 1081 QLVYLMYIKC MENQSFSSEK NKMIAGQGGF TKNTGLEDTV FPRKTSVFLT TVAKRQESGR1140
 1141 HNQENIPQAV TEKEAPIEEK GALPQVHIAT GSKNFPRDMF VLGTGQNINL HEETYVPVHK1200
 1201 NVPWTRNPTD TRQIPMVHFF KKRKEEETNS GGLVNKTRET VRNYPSQKNS VARRREQASG1260
 1261 RIKASARWLP DVNRSIQSLL KQIDHRKERK KFIIESRSAD SSGTKSPTQT NHSPSHVVKM1320
 1321 SAFPPRDIRR IESRDSSQVW VSSYAYDFET GSSRIRESSP FLNETETDNP SLAVPPRERF1380
 1381 VRRGRFASPE KVNTHSAPCD KPENVVSSEP VSPGEAVTVA LPPHVSTQEE EPLPAGSSCE1440
 1441 RRGHVDLFLE ISLQRTRGPV ERSRGRRSGG DTEGHTENPG KTPSPLPQMP KDQRGSEAGY1500
 1501 PKICRWRDGT VLPPRPHNLS LGAKKKPNLP RREATRVEQG EAPSLVSPEP LVLRRRPREA1560
 1561 STLLPGGEMR EDDGDGVTAE YDDDDDVMAE YDDDAVTVDT PEDFDIYGEE AGQGPRGFQQ1620
 1621 KTRHYFIAAV EELWDYGVRV SPGALGDRAW SGDAARFRKV VFREFTDGSF TQRVHRGELD1680
 1681 AHLGLLGPYI RAEVEDNIVV TFRNQASRPY SFYSSLVSYP EADGGAAPRS NFVRPNETKT1740
 1741 YFWRVRPHMA PTDGEFDCKA WAYFSDVDLE RDLHSGLIGP LLVCHASTLH PSHARPLAVQ1800
 1801 EFALLFAVFD ETKSWYCAEN LDRKCRPPRG TPAGDPAWRE EYRFHAVNGY VADALLGLVM1860
 1861 AEGRRTRWHL LSMGDPGHAQ SVHFSAHSVT VRDGGEHRTA VCNLYPGVFT TVEMLPSRAG1920
 1921 IWRVESLVGE HLRAGMSALF LVYSTRCQVP LGMASGYIRD SQITASGYHG LWTPQLARLH1980
 1981 NAGSVNAWSA KEPFAWIKVD LLAPMILHGI ETQGARHRLS SLYVSQFIIM YSLDGKQWLS2040
 2041 YRGNSTGSLM VFFGNVDAST VRHNRFDPPI VARYIRVHPT HASIRTALRM ELLGCDLNSC2100
 2101 SAPLGMESGW ISDTQVTASS HLSTTFSAWP PALARLHLRG GANAWRPQVN DPTQWLQVDL2160
 2161 QRTVKVTGVV TQGARSLLTA MFVKKFLVST SQDGRHWTHV LQDGKVKVFQ GNRDASTPMV2220
 2221 NSLHPPRFTR YLRIHPQVWE RQIALRLEIL GCEAQQLD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle