YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38051958, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAVPVRQ TCCCFNVRVA TVALAIYHIV MSVLLFIEHV VEVARGKVSC RFSKMPYLRL  60
   61 ADLLSSFLLI GVLFIISLSL LFGVVKNREK YLIPFLSLQI MDFLLCLLTL LGSYIELPAY 120
  121 LKFARPRPGP SKVPLMTLQL LDFCLSILTL CSSYMEVPTY LNFKSMNHMN YLPSQEGMPR 180
  181 SQFINMMLIF SVAFITVLIL KVYMFKCVWT CYRFMKHMNS AVEDSSSKLF LKVALPSYEE 240
  241 ALSLPTKTPE GDLAPPPYSE V

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.51
Transmembrane Helix	19	41	0.64
Cytoplasmic	42	62	0.59
Transmembrane Helix	63	84	0.92
Non-Cytoplasmic	85	94	0.59
Transmembrane Helix	95	117	0.83
Cytoplasmic	118	134	0.62
Transmembrane Helix	135	157	0.71
Non-Cytoplasmic	158	182	0.82
Transmembrane Helix	183	205	0.90
Cytoplasmic	206	261	0.87