YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40254770, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAGRKLQH ESRCRPSRPV DAWRAAATTR GRCMGTPGAR RRARRGGWGL PRTSSGLAAA  60
   61 GLLCTALTAC LCWGQLPPLP WASPAPQRPV SVLLWWEPFG GRGGHSKPPP DCSLRFNISG 120
  121 CRLLTDRAAY GEAQAVLFHH RDLVKGPPDW PPPWGAQERT DEALELRVFD DQEGAVMLAR 180
  181 EALETTGSRP PGQRWVWMNF ESPSHTPGLR GLAKDLFNWT LSYRTDSDIF VPYGFLYPRS 240
  241 HPAEQPSGLG PPLARKRGLV AWVVSHWNER QARVRYYHQL RRHVSVDVFG RAGPGQPVPA 300
  301 VGLLHTVARY KFYLAFENSQ HVDYITEKLW RNAFLAGAVP VVLGPDRANY ERFVPRGSFI 360
  361 HVDDFPSAAS LAAYLLFLDR NVAVYRRYFH WRRSYAVHIT SFWDEPWCQT CRAVQTSGDQ 420
  421 PKSIHNLADW FQR

Type	Start	End	Confidence
Cytoplasmic	1	49	0.64
Transmembrane Helix	50	73	0.58
Non-Cytoplasmic	74	433	0.97