YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GP119_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSFSFGVI LAVLTILIIA VNALVVVAML LSIYKNDGVG LCFTLNLAVA DTLIGVAISG  60
   61 LVTDQLSSSA QHTQKTLCSL RMAFVTSSAA ASVLTVMLIA FDRYLAIKQP LRYFQIMNGL 120
  121 VAGGCIAGLW LISYLIGFLP LGVSIFQQTT YHGPCTFFAV FHPRFVLTLS CAGFFPAVLL 180
  181 FVFFYCDMLK IASVHSQHIR KMEHAGAMVG ACRPPRPVND FKAVRTVSVL IGSFTLSWSP 240
  241 FLITSIVQVA CHKCCLYQVL EKYLWLLGVG NSLLNPLIYA YWQREVRQQL CHMALGLLAD 300
  301 GSTQPQIETL KGKEERKKVG RKTLYTCDAQ TLYTCDAQTL YTCDAQTLYT CDACDTQTLY 360
  361 TCDAQTLYTC DAQTLYTCDA QTLYTCDAQT LYTCDAQTLY TCDTQTLYTC DAQTLYTCDA 420
  421 QTLYTCDAQT LYTCDAQTLY TSSLVTGQTE QTPLKRANMS DPLRTCRG

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.76
Transmembrane Helix	8	31	0.92
Cytoplasmic	32	39	0.68
Transmembrane Helix	40	62	0.87
Non-Cytoplasmic	63	81	0.78
Transmembrane Helix	82	101	0.93
Cytoplasmic	102	115	0.68
Transmembrane Helix	116	138	0.87
Non-Cytoplasmic	139	164	0.74
Transmembrane Helix	165	186	0.92
Cytoplasmic	187	225	0.80
Transmembrane Helix	226	247	0.59
Non-Cytoplasmic	248	468	0.50