YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6980952, gi\|2...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRQLVNILT ALFAFFLGTN HFREAFCKDH DSRSGKHPSQ TLSPSDFLDK LMGRTSGYDA  60
   61 RIRPNFKGPP VNVTCNIFIN SFGSVTETTM DYRVNIFLRQ QWNDSRLAYS EYPDDSLDLD 120
  121 PSMLDSIWKP DLFFANEKGA NFHDVTTDNK LLRISKNGKV LYSIRLTLTL SCPMDLKNFP 180
  181 MDVQTCTMQL ESFGYTMNDL IFEWLSDGPV QVAEGLTLPQ FILKEEKELG YCTKHYNTGK 240
  241 FTCIEVKFHL ERQMGYYLIQ MYIPSLLIVI LSWVSFWINM DAAPARVALG ITTVLTMTTQ 300
  301 SSGSRASLPK VSYVKAIDIW MAVCLLFVFA ALLEYAAVNF VSRQHKEFLR LRRRQKRQNK 360
  361 EEDVTRESRF NFSGYGMGHC LQVKDGTAVK ATPANPLPQP PKDADAIKKK FVDRAKRIDT 420
  421 ISRAAFPLAF LIFNIFYWIT YKIIRHEDVH KK

Type	Start	End	Confidence
Signal Peptide	1	27	0.76
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	255	0.83
Transmembrane Helix	256	277	0.91
Cytoplasmic	278	284	0.67
Transmembrane Helix	285	304	0.74
Non-Cytoplasmic	305	318	0.66
Transmembrane Helix	319	341	0.89
Cytoplasmic	342	419	0.82
Transmembrane Helix	420	441	0.80
Non-Cytoplasmic	442	452	0.78