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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: KCNT2_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.28
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDLESEVPP LPPRYRFRDL LLGDQGWQND DRVQVEFYMN ENTFKERLKL FFIKNQRSSL  60
   61 RIRLFNFSLK LLSCLLYIIR VLLEKPSQGN DWSHIFWVNR SLPLWGLQVS VALISLFETI 120
  121 LLGYLSYKGN IWEQILRVPF ILEIINAVPF IISIFWPTLR NLFVPVFLNC WLAKHALENM 180
  181 INDLHRAIQR TQSAMFNQVL ILISTLLCLI FTCICGIQHL ERIGKKLNLF DSLYFCIVTF 240
  241 STVGFGDVTP ETWSSKLFVV AMICVALVVL PIQFEQLAYL WMERQKSGGN YSRHRAQTEK 300
  301 HVVLCVSSLK IDLLMDFLNE FYAHPRLQDY YVVILCPTEM DVQVRRVLQI PMWSQRVIYL 360
  361 QGSALKDQDL LRAKMDNAEA CFILSSRCEV DRTSSDHQTI LRAWAVKDFA PNCPLYVQIL 420
  421 KPENKFHIKF ADHVVCEEEF KYAMLALNCI CPATSTLITL LVHTSRGQCV CLCCREGQQS 480
  481 PEQWQKTYGR CSGNEVYHIV LEESTFFAEY EGKSFTYASF HAHKKFGVCL VGVRREDNKN 540
  541 ILLNPGPRYI MNASDICFYI NITKEENSAF KNQDQQRKSN VSRSFYHGPS RLPVHSIIAS 600
  601 MGTVAIDLQD TSCRAASGPT LALPSEGGKE LRRPSIAPVL EVADTSSIQT CDLLSDQSED 660
  661 ETTPDEETSS NLEYAKGYPP YSPYIGSSPT FCHLLQEKVP FCCLRLDKSC QHNYYEDAKA 720
  721 YGFKNKLIIV AAETAGNGLY NFIVPLRAYY RPKKELNPIV LLLDNPPDMH FLDAICWFPM 780
  781 VYYMVGSIDN LDDLLRCGVT FAANMVVVDK ESTMSAEEDY MADAKTIVNV QTLFRLFSSL 840
  841 SIITELTHPA NMRFMQFRAK DCYSLALSKL EKKERERGSN LAFMFRLPFA AGRVFSISML 900
  901 DTLLYQSFVK DYMISITRLL LGLDTIPGSG FLCSMKITED DLWIRTYARL YQKLCSSTGD 960
  961 VPIGIYRTES QKLTTSESQI SISVEEWEDT KDVKDPGHHR SIHRNSTSSD QSDHPLLRRK1020
 1021 SMQWARRLSR KGPKHSGKTA EKITQQRLNL YRRSERQELA ELVKNRMKHL GLSTVGYDEM1080
 1081 NDHQSTLSYI LINPSPDTRL ELNDVVYLIR PDPLSYLPNS EPSRKNSICN AAVQDSREET1140
 1141 QL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle