YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHQTHAYHM VNPSPWPLTG ALSALLLTSG LVMWFHYNST ILLSLGLLTN ILTMYQWWRD  60
   61 IIREGTYQGH HTPIVQKGLR YGMILFIVSE VFFFAGFFWA FYHSSLVPTH DLGGCWPPTG 120
  121 ITPLNPLEVP LLNTSVLLAS GVSITWAHHS LMEGNRNHMN QALLITILLG LYFTILQASE 180
  181 YFETSFSISD GIYGSTFFMA TGFHGLHVII GSTFLIVCLL RQLKFHFTSK HHFGFEAAAW 240
  241 YWHFVDVVWL FLYVSIYWWG S

Type	Start	End	Confidence
Cytoplasmic	1	13	0.81
Transmembrane Helix	14	35	0.84
Non-Cytoplasmic	36	39	0.68
Transmembrane Helix	40	58	0.89
Cytoplasmic	59	78	0.94
Transmembrane Helix	79	102	0.91
Non-Cytoplasmic	103	128	0.92
Transmembrane Helix	129	149	0.91
Cytoplasmic	150	158	0.86
Transmembrane Helix	159	179	0.89
Non-Cytoplasmic	180	199	0.87
Transmembrane Helix	200	220	0.92
Cytoplasmic	221	238	0.89
Transmembrane Helix	239	259	0.93
Non-Cytoplasmic	260	261	0.84