YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RXFP1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.50
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.49
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	409	0.98
Transmembrane Helix	410	429	0.95
Cytoplasmic	430	440	0.80
Transmembrane Helix	441	461	0.93
Non-Cytoplasmic	462	486	0.87
Transmembrane Helix	487	508	0.92
Cytoplasmic	509	527	0.91
Transmembrane Helix	528	548	0.94
Non-Cytoplasmic	549	580	0.92
Transmembrane Helix	581	603	0.87
Cytoplasmic	604	629	0.87
Transmembrane Helix	630	650	0.90
Non-Cytoplasmic	651	660	0.86
Transmembrane Helix	661	683	0.88
Cytoplasmic	684	758	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSGPFFFCV FIIGRYFTLG NAQDVSCPLG SFPCGNISKC LPQLLHCNGV DDCGNQADED  60
   61 NCGDNNGWSL QLDKYFANYY KLTSTNSIEA ETSECLVGSV PMHCLCRDLE LDCDEANLRA 120
  121 VPSVSSNVTV MSLQWNFIRT LPPNSFRKYH DLQKLCLQNN KIRSVSVSAF RGLHSLTKLY 180
  181 LSHNRITFLK PGVFEDLHRL EWLIIEDNHL SRISPLTFYG LNSLILLVLM NNALTRLPDK 240
  241 PLCQHMPRLH WLDFEGNRIH NLRNLTFISC NNLTVLVMRK NKINHLNEHA FTHLQKLDEL 300
  301 DLGSNKIENL PPNIFKDLKE LSQLNISYNP IQKIEVNQFD YLAKLKSLSL EGIEISNIQQ 360
  361 RMFRPLINLS HIYFKKFQYC GYAPHVRSCK PNTDGISSLE NLLASIIQRV FVWVVSAITC 420
  421 FGNIFVICMR PYIRSENKLH AMSIMSLCCA DCLMGVYLFV IGAFDLKFRG EYRKHAQPWM 480
  481 ESVHCQFMGS LAVLSTEVSV LLLTFLTLEK YICIVYPFRC LRPRKCRTVA VLIFIWITGF 540
  541 IVAFAPLGNK EFFKNYYGTN GVCFPLHSED TGSTGAQIYS VVIFLGINLV AFIIIVFSYG 600
  601 SMFYSVHQST ITATEIQKQV KKEMILAKRF FFIVFTDALC WIPIFILKFL SLIRVEIPDT 660
  661 ITSWVVIFIL PINSALNPII YTLTTRPFKE MIHQLWYNYR QRRSVDRKGT QKAYTPSFIW 720
  721 VEMWPLQEMS TEFMKPDAFT DPCDLSLVSR SSRLNSYS