YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	V1AR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPRGSQDR SVGNSSPWWP LTTEGSNGSQ EAARLGEGDS PLGDVRNEEL AKLEIAVLAV  60
   61 IFVVAVLGNS SVLLALHRTP RKTSRMHLFI RHLSLADLAV AFFQVLPQLC WDITYRFRGP 120
  121 DWLCRVVKHL QVFAMFASAY MLVVMTADRY IAVCHPLKTL QQPARRSRLM IATSWVLSFI 180
  181 LSTPQYFIFS VIEIEVNNGT KTQDCWATFI QPWGTRAYVT WMTSGVFVAP VVVLGTCYGF 240
  241 ICYHIWRNIR GKTASSRHSK GDKGSGEAVG PFHKGLLVTP CVSSVKSISR AKIRTVKMTF 300
  301 VIVSAYILCW APFFIVQMWS VWDENFIWTD SENPSITITA LLASLNSCCN PWIYMFFSGH 360
  361 LLQDCVQSFP CCHSMAQKFA KDDSDSMSRR QTSYSNNRSP TNSTGMWKDS PKSSKSIRFI 420
  421 PVST

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.91
Transmembrane Helix	55	76	0.90
Cytoplasmic	77	87	0.89
Transmembrane Helix	88	110	0.84
Non-Cytoplasmic	111	129	0.89
Transmembrane Helix	130	152	0.86
Cytoplasmic	153	168	0.93
Transmembrane Helix	169	189	0.92
Non-Cytoplasmic	190	220	0.94
Transmembrane Helix	221	242	0.91
Cytoplasmic	243	295	0.95
Transmembrane Helix	296	316	0.92
Non-Cytoplasmic	317	335	0.85
Transmembrane Helix	336	356	0.86
Cytoplasmic	357	424	0.92