YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ASGR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDFQDIQQ LDSEENDHQL IGDEEQGSHV QNLRTENPRW GGQPPSRPFP QRLCSKFRLS  60
   61 LLALAFNILL LVVICVVSSQ SMQLQKEFWT LKETLSNFST TTLMEFKALD SHGGSRNDNL 120
  121 TSWETILEKK QKDIKADHST LLFHLKHFPL DLRTLTCQLA FFLSNGTECC PVNWVEFGGS 180
  181 CYWFSRDGLT WAEADQYCQM ENAHLLVINS REEQEFVVKH RGAFHIWIGL TDKDGSWKWV 240
  241 DGTEYRSNFK NWAFTQPDNW QGHEEGGSED CAEILSDGLW NDNFCQQVNR WACERKRDIT 300
  301 Y

Type	Start	End	Confidence
Cytoplasmic	1	56	0.98
Transmembrane Helix	57	78	0.90
Non-Cytoplasmic	79	301	0.98