YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQP1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEIKKKLF WRAVVAEFLA MTLFVFISIG SALGFNYPLE RNQTLVQDNV KVSLAFGLSI  60
   61 ATLAQSVGHI SGAHLNPAVT LGLLLSCQIS ILRAVMYIIA QCVGAIVASA ILSGITSSLL 120
  121 ENSLGRNDLA RGVNSGQGLG IEIIGTLQLV LCVLATTDRR RRDLGGSAPL AIGLSVALGH 180
  181 LLAIDYTGCG INPARSFGSA VLTRNFSNHW IFWVGPFIGS ALAVLIYDFI LAPRSSDFTD 240
  241 RMKVWTSGQV EEYDLDADDI NSRVEMKPK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.98
Transmembrane Helix	9	33	0.84
Non-Cytoplasmic	34	65	0.78
Transmembrane Helix	66	85	0.72
Cytoplasmic	86	94	0.68
Transmembrane Helix	95	117	0.89
Non-Cytoplasmic	118	137	0.85
Transmembrane Helix	138	157	0.92
Cytoplasmic	158	163	0.94
Transmembrane Helix	164	184	0.89
Non-Cytoplasmic	185	209	0.87
Transmembrane Helix	210	231	0.94
Cytoplasmic	232	269	0.97