YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYT7_RAT
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRDPEAASP GAPTRDVLLV SAIITVSLSV TIVLCGLCHW CQRKLGKRYK NSLETVGTPD  60
   61 SGRGRGEKKA IKLPAGGKAV NTAPVPGQTP HDESDRRTEP RSSVSDLVNS LTSEMLMLSP 120
  121 GSEEDEAHEG CSRENLGRIQ FSVGYNFQES TLTVKVMKAQ ELPAKDFSGT SDPFVKIYLL 180
  181 PDKKHKLETK VKRKNLNPHW NETFLFEGFP YEKVVQRILY LQVLDYDRFS RNDPIGEVSI 240
  241 PLNKVDLTQM QTFWKDLKPC SDGSGSRGEL LLSLCYNPSA NSIIVNIIKA RNLKAMDIGG 300
  301 TSDPYVKVWL MYKDKRVEKK KTVTKKRNLN PIFNESFAFD IPTEKLRETT IIITVMDKDK 360
  361 LSRNDVIGKI YLSWKSGPGE VKHWKDMIAR PRQPVAQWHQ LKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.70
Transmembrane Helix	18	41	0.85
Cytoplasmic	42	403	0.66