YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2217942, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNEELWAQP ALEMPKRRDI LAIVLIVLPW TLLITVWHQS SLAPLLAVHK DEGSDPRHEA  60
   61 PPGADPREYC MSDRDIVEVV RTEYVYTRPP PWSDTLPTIH VVTPTYSRPV QKAELTRMAN 120
  121 TLLHVPNLHW LVVEDAPRRT PLTARLLRDT GLNYTHLHVE TPRNYKLRGD ARDPRIPRGT 180
  181 MQRNLALRWL RETFPRNSTQ PGVVYFADDD NTYSLELFEE MRSTRRVSVW PVAFVGGLRY 240
  241 EAPRVNGAGK VVGWKTVFDP HRPFAIDMAG FAVNLRLILQ RSQAYFKLRG VKGGYQESSL 300
  301 LRELVTLNDL EPKAANCTKI LVWHTRTEKP VLVNEGKKGF TDPSVEI

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	38	0.95
Non-Cytoplasmic	39	347	0.99