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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149019757, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.58
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGAGSRGAG PARRQGARGP PLLLLLWLLP GLAAAQDLNP RGRNVCRTPG SQVLTCCAGW  60
   61 RQLGDECGIA VCEGNSTCSE NEVCVRPGEC RCRHGYFGAN CDTKCPRQFW GPDCKERCSC 120
  121 HPHGQCEDVT GQCTCHARRW GARCEHACQC QHGTCHPRSG ACRCEPGWWG AQCASACYCS 180
  181 ATSRCDPQTG ACLCHAGWWG RSCNNQCSCN SSPCEQQSGR CQCRERTFGA RCDRYCQCFR 240
  241 GRCHPVDGTC ACDPGYRGKY CREPCPAGFY GLGCRRRCGQ CKGQQPCTVV EGRCLTCEPG 300
  301 WNGTKCDQPC ATGFYGEGCG HRCPPCRDGH ACNHVTGKCT HCNAGWIGDR CETKCSNGTY 360
  361 GEDCAFVCSD CGSGHCDFQS GRCLCSPGVH GPHCNVTCPA GLHGVDCAQA CSCHEESCDP 420
  421 VTGACHLETN QRKGVMGAGA LLTLLLGLLL SLLGCCCACR GKDSARRELT LGRKKAPQRF 480
  481 CGSFSRISMK LPRIPLRRQK LPKVVVAHHD LDNTLNCSFL EPPSGLEQPS PSWSSRASFS 540
  541 SFDTTDEGPV YCVPHEEATA ENRDPEASAS LTEVPAVSLA PMGTSVPGDE AAALPASSDS 600
  601 ERSASSVEGP GGALYARVAR REARPARTRC EAGGLSLSPS PERRKPPPPD PATKPKVSWI 660
  661 HGKQGAVAAA PSPPPAGRKA APSPSGRKRT PSNMSVQPPG LTEEATGPAS PTPPRARARG 720
  721 RGPGLLEPTD AGGPPRSAPE AASMLAAELR DKTRSLGRAE KPPPPQKAKR SVLPASTARA 780
  781 ASASEASASE KVAASAPEPE TPRKKTPIQK PPRKKSREAA GEPSRAGAAP GAS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle