YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56090546, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFACWNLS LTLLVLFCSP GSGEKAFEVY IRSEKQIVKA TEAWRVNCST SCAAPEIGGL  60
   61 ETPTNKLMLE EDPHGKWIEF LVSNATVDTV LLCHFTCSGK QQAESFNIRV YEPPAQVTLK 120
  121 LQPPRVFMGE AFTIECKVPS VKPLESLTLS LLCGRETLKN QTFGGAETVP EEVIAIFNST 180
  181 ALKKDGLNFS CQAELDLRPH GGSLYRRISE YQSLEVYEIR QDNQMVIIIV VVSILLFLFV 240
  241 TSVLLCFILG QHWHRRRTGT YGVLAAWRRL PRALRGR

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	224	0.99
Transmembrane Helix	225	249	0.92
Cytoplasmic	250	277	0.98