YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34873846, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTKPTEQVS WGPYSGYEEE AYSAGPLPEL CYKADVQAFS RAFQPSVSLM VAVLGLVGNG  60
   61 LVLATHLAAR RTTRSPTSVH LLQLALADLL LALTLPFAAA GALQGWNLGS TTCRAISGLY 120
  121 SASFHAGFLF LACISADRYV AITRALPAGQ RPSTPSRAHL VSVFVWLLSL LLALPALLFS 180
  181 RDGPREGQRR CRLLFPESLT QTVKGASAVA QVVLGFALPL GVMAACYALL GRTLLAARGP 240
  241 ERRRALRVVV ALVVAFVVLQ LPYSLALLLD TADLLAARER SCSSSKRKDL ALLVTGGLTL 300
  301 VRCSLNPVLY AFLGLRFRQD LRRLLQGGGC SPKPNPRGRC PRRLRLSSCS APTETHSVSW 360
  361 DN

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.95
Transmembrane Helix	47	69	0.88
Cytoplasmic	70	78	0.95
Transmembrane Helix	79	103	0.84
Non-Cytoplasmic	104	120	0.81
Transmembrane Helix	121	141	0.88
Cytoplasmic	142	157	0.92
Transmembrane Helix	158	179	0.91
Non-Cytoplasmic	180	207	0.97
Transmembrane Helix	208	231	0.85
Cytoplasmic	232	244	0.84
Transmembrane Helix	245	267	0.88
Non-Cytoplasmic	268	292	0.93
Transmembrane Helix	293	314	0.80
Cytoplasmic	315	362	0.86