YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K1C15_RAT
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTFLQTSS TFGSGSTRGG SLRVGGGSFG GGSLYGGGGS RSISASSARF VSSGAGVGFG  60
   61 GGMSCGFGGG FGGGFGGGFG DFGGGDGGLL SGNEKVTMQN LNDRLASYLD KVRALEEANT 120
  121 ELEVKIRDWY QKQSPASPDR DYSHYFKTME EIRDKILAAT IDNSRVILEI DNARLAADDF 180
  181 RLKYENELAL RQGVEADING LRRVLDELTL ARTDLEMQIE QLNEELAYLK KNHEEEMKEF 240
  241 SSQLAGQVNV EMDAAPGVDL TRMLAEMREQ YEAIAEKNRR DVEAWFFSKT EELNKEVASN 300
  301 TEMIQTSKTE ITDLRRTLQG LEIELQSQLS MKAGLENSLA EVECRYATQL QQIQGLITGL 360
  361 ETQLSELRCE MEAQNQEYNM LLDIKTRLEQ EISTYRNLLE GQDAKMAAIG VREASLRGGS 420
  421 SGGGSNFHIS VEESVDGKVV SSRKRES

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.52
Transmembrane Helix	19	39	0.60
Cytoplasmic	40	49	0.58
Transmembrane Helix	50	75	0.66
Non-Cytoplasmic	76	447	0.83