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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109488409, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLILLFLL PSPLHSQPTC DVSKVTSLLE VNCEDKKLKK LPTDLPADTG ILHLSKNQLG  60
   61 TFSTSYLVHF THLTHLYLSR CELTSLQAHE KLLKLETLDL SHNHLQSLPS LGRALPALTT 120
  121 LDVSFNKLGS LSPGALEGLG QLEELYLQNN DLKSLPPGLL MPTTKLLKLS LANNKLRELP 180
  181 PGLLDGLEDL DTLYLQGNWL STIPKGFFGS LLLPFVFLHA NTWYCDCEIL YFRNWLQENP 240
  241 NRVYLWKEGV DVKAMTANVA SVRCANLGNA PVYSYPGKGC PTNEGDIDYD DYADTPTTRT 300
  301 EVKFSTNTKA HTTYWGLFYS ESSTSPDSQM TSLPPIHEPT KKQPTFAHTE IPGFTTLPDT 360
  361 MESNTAFYSL NNTVPTTTPE PTSTQATPEP SSTPMLTTPV PTPEPSSIPM LTVPVSTPEP 420
  421 SSTPMLTTPV STPEPSSIPM PTIPVPTPEP SSIPMPTIPV PTPEPSSTPM PTIPVPTPEP 480
  481 SSTPMFTTPV PTPEPSSTPM LTTPTLTTPE SSSTPSILVS TIPPVLTTTL APPESIPKTV 540
  541 LEQFYTLEPT LPRTLESTII IPEQNSLNSQ AVPQASSDTP KSNPFLNSDF CCLLPLGFYV 600
  601 LGLLWLLFAS VVLIVLLTWI WHVTPHNLDM DQSAALATST HTTSLEMQRA RQVTMPWAWL 660
  661 LSLQGSLPTF RSSLFLWVRP NGRVGPLVAG RRPSALSQGH GQDLLGRVGI RYSGHSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle