YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ODFP4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESDLTVEES ETIKTRSRRP LTEHRRHSLL PLQWKLAHSS RWMAQVVASE FSLLAFLLLL  60
   61 LMVFSKKWLY PSKSRFHQRY PQNITKRVYT SIHSMSTGLL YICISKSCLS SDNEEDNFKM 120
  121 WTIHPAFGVA KISFILAVGL GFVLTVWLHL PYLPCLQRMP FFGLIGIILS FCEVTLIFLT 180
  181 LLLFPVNLWI YELKKNISVP IGWSYFIGWL VLILYLTCGI LCYLNHKNFW SLIMSSSSIN 240
  241 ATCSSSVPVS LMNTSQISKS QADILDPTQD DQKPLSSDNI ALPPNPDTTD

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.54
Transmembrane Helix	42	69	0.76
Cytoplasmic	70	88	0.50
Transmembrane Helix	89	104	0.43
Non-Cytoplasmic	105	126	0.73
Transmembrane Helix	127	150	0.89
Cytoplasmic	151	160	0.71
Transmembrane Helix	161	184	0.92
Non-Cytoplasmic	185	204	0.72
Transmembrane Helix	205	224	0.96
Cytoplasmic	225	290	0.71