YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34875654, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	57	0.94
Non-Cytoplasmic	58	65	0.76
Transmembrane Helix	66	89	0.82
Cytoplasmic	90	99	0.65
Transmembrane Helix	100	117	0.92
Non-Cytoplasmic	118	121	0.60
Transmembrane Helix	122	146	0.64
Cytoplasmic	147	156	0.74
Transmembrane Helix	157	180	0.78
Non-Cytoplasmic	181	186	0.80
Transmembrane Helix	187	208	0.95
Cytoplasmic	209	275	0.91
Transmembrane Helix	276	296	0.88
Non-Cytoplasmic	297	314	0.82
Transmembrane Helix	315	335	0.94
Cytoplasmic	336	343	0.75
Transmembrane Helix	344	363	0.83
Non-Cytoplasmic	364	366	0.53
Transmembrane Helix	367	388	0.58
Cytoplasmic	389	396	0.44
Transmembrane Helix	397	418	0.69
Non-Cytoplasmic	419	430	0.62
Transmembrane Helix	431	455	0.80
Cytoplasmic	456	466	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGVRGRGA SGQDLTSETP VTATASSSAV SSRRFLLWLY LVGFLDLFGV SMTVPLLNLH  60
   61 VRSLGVSPVV AGIVGSSYGI LQLFSSTFVG CWSDVVGRRC SLLVCILLSA LGYLLLGMST 120
  121 NVFLFTLARV PVGVFKHTLS ISRALLSDLV TEKERPLVLG QFNTASGVGF ILGPVIGGYL 180
  181 TELDGGFYVT AFMCCSVFLL NAGLVWLLPW RETSLNIPDS GWSLDQKHAT VTIKSESTLQ 240
  241 GAATTPEARR SGRNLRPPWV EVMSTLKDMK NLIFSALWDV FLVRLLMGVA VMLYYSNFVL 300
  301 ALEERFGVRP KTTGYLISYT SALGTLAGFA VGPILRLYKH NSHMVLLHSS ALTCLLLLLY 360
  361 STTNSMAMVV LSSTLLSFST TIGRTCITDL QLSVGGAQAS GTVIGVGQSV TAVGRILAPL 420
  421 LSGLAQEISP CGPPSLGAAL ALVAILIMTL YRPPFSGDGS ERLKRE