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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|34875587, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPHWAVWLL AAGLWGLGIG AEMWWNLAPR KTVSSGELVT VVRRFSQTGI QDFLTLTLTD  60
   61 RSGLLYVGAR EALFAFSVEA LELQGVISWE APAEKKIECT QKGKSNQTEC FNFIRFLQPY 120
  121 NASHLYVCGT YAFQPKCTYI NMLTFTLDRA EFEDGKGKCP YDPAKGHTGL LVDGELYSAT 180
  181 LNNFLGTEPV ILRNMGPHHP IKTEYLAFWL NEPHFVGSAF VPESVGSFTG DDDKIYFFFS 240
  241 ERAVEYDCYS EQVVARVARV CKGDMGGART LQKKWTTFLK ARLVCSAPDW KVYFNQLRAV 300
  301 HTLLGASWHN TTFFAVFQAR WGDMDLSAVC EYQLEHIQQV FEGPFKEYSE QAQKWARYTD 360
  361 PVPTPRPGSC INNWHRDNGY TSSLELPDNT LNFIKKHPLM EEQVKPRLGR PLLVKKNTNF 420
  421 THVVADRILG LDGATYTVLF IGTGDGWLLK AVSLGPWIHM VEELQVFDQE PVESLVLSQS 480
  481 KKVLFAGSRS QLVQLSLADC TKYRFCVDCV LARDPYCAWN VNTSRCVATG GHSGSLLVQH 540
  541 VANLDPSKMC IQYAIKKARP VVPKNITVVA GTDLVLPCHL SSNLAHALWT FRGRDLPAEQ 600
  601 PGSFLYDTGL QALVVMAAQS RHSGPYHCYS EEQGTKLAAE SYLVSVVAGS SVTLEARAPL 660
  661 ENLGLVWLAV VALGAVCLVL LLLVLSLRRR LREELEKGSK AAERTLVYPL ELPKEPASPP 720
  721 FRPGPETDEK LWDPVGYYYS DGSLKIVPGH ARCQPGGGPP SPPPGIPGQP LPSPTRLHLG 780
  781 GGRNSNANGY VRLQLGGEDR EGSGHPLPEI ADELRRKLQQ RQPLPDSNPE ESSV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle