YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34868262, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAAAEALG LLWGWLWSGR FWLPQNVSWA DLEGPGDGYG YPRARHVLSV FPLAAGLFSV  60
   61 RMLFERFIAK PCALRIGIED SAVYQVESNV TLEKVFTSIS KYPDEKRLKG LSKQLDWDVR 120
  121 KIQCWFRHRR NQDKPPTLTK FCESMWRFTF YFCIFCYGVR FLWSMPWLWD TRQCWYNYPY 180
  181 QPLSRELYYY YLTQLAFYWS LVFSQFIDVK RKDFLMMFMH HLIAVTLISF SYINNMVRVG 240
  241 AIILCLHDSA DSLLEAAKLA NYARQERLCN TLFVIFGAAF MVTRLGIFPL WILNTTLFES 300
  301 WEIIGPFPSW WLFNGLLLIL QMLHVIWSYL IARTAFKALV RGKVSKDDRS DVESSSEEDE 360
  361 TTHTNNLSGS SSSNGANCMN GRMGGSHLAE EQGTCKAAGN LHFGASPRIH SCD

Type	Start	End	Confidence
Cytoplasmic	1	8	0.73
Transmembrane Helix	9	24	0.75
Non-Cytoplasmic	25	43	0.80
Transmembrane Helix	44	64	0.82
Cytoplasmic	65	147	0.96
Transmembrane Helix	148	167	0.91
Non-Cytoplasmic	168	186	0.91
Transmembrane Helix	187	207	0.75
Cytoplasmic	208	267	0.60
Transmembrane Helix	268	292	0.86
Non-Cytoplasmic	293	309	0.90
Transmembrane Helix	310	331	0.92
Cytoplasmic	332	413	0.97