YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109481113, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLWALLAL GCLRCGWTVN LQPQLASVTF ATNNPTLTTV ALEKPLCMFD SSEPLSGAYE  60
   61 VYLYAMVDSA ISWNVSVQDS TGAPLSTTFR QTQGGRSGPY KAVAFDLTPC GDLPSLDAVG 120
  121 DVTQASEILN AYLVRVGNNG TCFWDPNFQG LCNPPLTAAT EYRFKYVLVN TSTGLVQDQT 180
  181 LWSDPIRTNR PSPYLAIDTW PGRRSGGMIV ITSILGSLPF FLLVGFAGAI ILSFVDMGSS 240
  241 DGETTHDSQI TQEAVPKTLG ASEPSYSSVN RAPPLDRAEV FSSKLQD

Type	Start	End	Confidence
Signal Peptide	1	21	0.83
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	208	0.90
Transmembrane Helix	209	232	0.80
Cytoplasmic	233	287	0.79