YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCNAA_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.94
Transmembrane Helix	100	119	0.78
Non-Cytoplasmic	120	127	0.65
Transmembrane Helix	128	147	0.92
Cytoplasmic	148	157	0.69
Transmembrane Helix	158	178	0.72
Non-Cytoplasmic	179	190	0.82
Transmembrane Helix	191	211	0.86
Cytoplasmic	212	221	0.82
Transmembrane Helix	222	241	0.88
Non-Cytoplasmic	242	248	0.72
Transmembrane Helix	249	268	0.95
Cytoplasmic	269	371	0.83
Transmembrane Helix	372	397	0.86
Non-Cytoplasmic	398	664	0.64
Transmembrane Helix	665	683	0.77
Cytoplasmic	684	695	0.39
Transmembrane Helix	696	718	0.77
Non-Cytoplasmic	719	727	0.48
Transmembrane Helix	728	745	0.35
Cytoplasmic	746	777	0.70
Transmembrane Helix	778	803	0.82
Non-Cytoplasmic	804	828	0.72
Transmembrane Helix	829	847	0.75
Cytoplasmic	848	863	0.69
Transmembrane Helix	864	888	0.90
Non-Cytoplasmic	889	1153	0.78
Transmembrane Helix	1154	1172	0.84
Cytoplasmic	1173	1191	0.61
Transmembrane Helix	1192	1209	0.80
Non-Cytoplasmic	1210	1218	0.59
Transmembrane Helix	1219	1239	0.76
Cytoplasmic	1240	1269	0.63
Transmembrane Helix	1270	1296	0.81
Non-Cytoplasmic	1297	1353	0.58
Transmembrane Helix	1354	1371	0.54
Cytoplasmic	1372	1393	0.59
Transmembrane Helix	1394	1415	0.92
Non-Cytoplasmic	1416	1476	0.63
Transmembrane Helix	1477	1496	0.73
Cytoplasmic	1497	1511	0.76
Transmembrane Helix	1512	1531	0.79
Non-Cytoplasmic	1532	1541	0.74
Transmembrane Helix	1542	1564	0.87
Cytoplasmic	1565	1592	0.78
Transmembrane Helix	1593	1609	0.75
Non-Cytoplasmic	1610	1610	0.37
Transmembrane Helix	1611	1634	0.71
Cytoplasmic	1635	1646	0.47
Transmembrane Helix	1647	1668	0.59
Non-Cytoplasmic	1669	1696	0.65
Transmembrane Helix	1697	1720	0.86
Cytoplasmic	1721	1956	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELPFASVGT TNFRRFTPES LAEIEKQIAA HRAAKKARTK HRGQEDKGEK PRPQLDLKAC  60
   61 NQLPKFYGEL PAELVGEPLE DLDPFYSTHR TFMVLNKSRT ISRFSATWAL WLFSPFNLIR 120
  121 RTAIKVSVHS WFSIFITITI LVNCVCMTRT DLPEKVEYVF TVIYTFEALI KILARGFCLN 180
  181 EFTYLRDPWN WLDFSVITLA YVGAAIDLRG ISGLRTFRVL RALKTVSVIP GLKVIVGALI 240
  241 HSVRKLADVT ILTVFCLSVF ALVGLQLFKG NLKNKCIRNG TDPHKADNLS SEMAEYIFIK 300
  301 PGTTDPLLCG NGSDAGHCPG GYVCLKTPDN PDFNYTSFDS FAWAFLSLFR LMTQDSWERL 360
  361 YQQTLRASGK MYMVFFVLVI FLGSFYLVNL ILAVVTMAYE EQSQATIAEI EAKEKKFQEA 420
  421 LEVLQKEQEV LAALGIDTTS LQSHSGSPLA SKNANERRPR VKSRVSEGST DDNRSPQSDP 480
  481 YNQRRMSFLG LSSGRRRASH GSVFHFRAPS QDISFPDGIT DDGVFHGDQE SRRGSILLGR 540
  541 GAGQTGPLPR SPLPQSPNPG RRHGEEGQLG VPTGELTAGA PEGPALDTTG QKSFLSAGYL 600
  601 NEPFRAQRAM SVVSIMTSVI EELEESKLKC PPCLISFAQK YLIWECCPKW RKFKMALFEL 660
  661 VTDPFAELTI TLCIVVNTVF MAMEHYPMTD AFDAMLQAGN IVFTVFFTME MAFKIIAFDP 720
  721 YYYFQKKWNI FDCVIVTVSL LELSASKKGS LSVLRTFRLL RVFKLAKSWP TLNTLIKIIG 780
  781 NSVGALGNLT FILAIIVFIF ALVGKQLLSE DYGCRKDGVS VWNGEKLRWH MCDFFHSFLV 840
  841 VFRILCGEWI ENMWVCMEVS QKSICLILFL TVMVLGNLVV LNLFIALLLN SFSADNLTAP 900
  901 EDDGEVNNLQ LALARIQVLG HRASRAIASY ISSHCRFRWP KVETQLGMKP PLTSSEAKNH 960
  961 IATDAVSAAV GNLTKPALSS PKENHGDFIT DPNVWVSVPI AEGESDLDEL EEDMEQASQS1020
 1021 SWQEEDPKGQ QEQLPQVQKC ENHQAARSPA SMMSSEDLAP YLGESWKRKD SPQVPAEGVD1080
 1081 DTSSSEGSTV DCPDPEEILR KIPELADDLD EPDDCFTEGC TRRCPCCNVN TSKSPWATGW1140
 1141 QVRKTCYRIV EHSWFESFII FMILLSSGAL AFEDNYLEEK PRVKSVLEYT DRVFTFIFVF1200
 1201 EMLLKWVAYG FKKYFTNAWC WLDFLIVNIS LTSLIAKILE YSDVASIKAL RTLRALRPLR1260
 1261 ALSRFEGMRV VVDALVGAIP SIMNVLLVCL IFWLIFSIMG VNLFAGKFSK CVDTRNNPFS1320
 1321 NVNSTMVNNK SECHNQNSTG HFFWVNVKVN FDNVAMGYLA LLQVATFKGW MDIMYAAVDS1380
 1381 GEINSQPNWE NNLYMYLYFV VFIIFGGFFT LNLFVGVIID NFNQQKKKLG GQDIFMTEEQ1440
 1441 KKYYNAMKKL GSKKPQKPIP RPLNKYQGFV FDIVTRQAFD IIIMVLICLN MITMMVETDE1500
 1501 QGEEKTKVLG RINQFFVAVF TGECVMKMFA LRQYYFTNGW NVFDFIVVIL SIGSLLFSAI1560
 1561 LKSLENYFSP TLFRVIRLAR IGRILRLIRA AKGIRTLLFA LMMSLPALFN IGLLLFLVMF1620
 1621 IYSIFGMASF ANVVDEAGID DMFNFKTFGN SMLCLFQITT SAGWDGLLSP ILNTGPPYCD1680
 1681 PNLPNSNGSR GNCGSPAVGI IFFTTYIIIS FLIVVNMYIA VILENFNVAT EESTEPLSED1740
 1741 DFDMFYETWE KFDPEATQFI AFSALSDFAD TLSGPLRIPK PNQNILIQMD LPLVPGDKIH1800
 1801 CLDILFAFTK NVLGESGELD SLKTNMEEKF MATNLSKASY EPIATTLRWK QEDLSATVIQ1860
 1861 KAYRSYMLHR SLTLSNTLHV PRAEEDGVSL PGEGYVTFMA NSGLPDKSET ASATSFPPSY1920
 1921 DSVTRGLSDR ANINPSSSMQ NEDEVAAKEG NSPGPQ