YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34867022
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSDGEDSP ASRTFIEEAT EYLQHTSGRD DLKLLLTEDG AWEAFVAEAE LSRADADTLR  60
   61 DALNALTANM AEEDQNRLQH DLQDVERFID VFPQVKLELE RHVRKLRTLA DKVDKVHRDC 120
  121 TISKVVAGST STVSGVLTLL GLALVPVTAG VSLVLLATGM GLGAAAAVTS VSTGIVDYTS 180
  181 KSSAQTEASH LVSTSMVKVK MAAEAVVYSG PQVFSLSESC CRVLRCIEQS VYAIKLTKAN 240
  241 PALAASVKRL MTVGSISAQS DKHVKKAFKG TALAMSRRTR IMGIATAGVS LIGDVISLVK 300
  301 ESKNLYKGAK AKSAEELRQQ ARELEEKLEV LVQIYDGLQS GSTQSS

Type	Start	End	Confidence
Cytoplasmic	1	124	0.92
Transmembrane Helix	125	145	0.81
Non-Cytoplasmic	146	152	0.57
Transmembrane Helix	153	176	0.80
Cytoplasmic	177	346	0.72