YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34866425, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSQALPHGH MQTLIFLDLE ATGLPYSQPK ITELCLLAVH RHALENSSMS EGQPPPVPKP  60
   61 PRVVDKLSLC IAPGKPCSSG ASEITGLTTA GLEAHGRQRF NDNLATLLQV FLQRQPQPCC 120
  121 LVAHNGDRYD FPLLQAELAS LSVISPLDGT FCVDSIAALK TLEQASSPSE HGPRKSYSLG 180
  181 SIYTRLYGQA PTDSHTAEGD VLALLSICQW KPQALLQWVD KHARPFSTIK PMYGMAATTG 240
  241 TASPRLCAAT TSSPLATANL SPSNGRSRGK RPTSPPPENV PEAPSREGLL APLGLLTFLT 300
  301 LAIAVLYGIF LASPGQ

Type	Start	End	Confidence
Cytoplasmic	1	288	0.52
Transmembrane Helix	289	311	0.91
Non-Cytoplasmic	312	316	0.42