YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34866853, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAASLR RSVLGPRGMG LPGASAPGLL GGARPRHLPL RTPQAVSLSS KSGPSRGRKV  60
   61 MLSALGMLAA GGAGLAVALH SAVSASDLEL HPPSYPWSHR GLLSSLDHTS IRRGFQVYKQ 120
  121 VCSSCHSMDY VAYRHLVGVC YTEEEAKALA EEVEVQDGPN EDGNMFMRPG KLSDYFPKPY 180
  181 PNPEAARAAN NGALPPDLSY IVRARHGGED YVFSLLTGYC EPPTGVSLRE GLYFNPYFPG 240
  241 QAIGMAPPIY TEVLEYDDGT PATMSQVAKD VATFLRWASE PEHDHRKRMG LKMLLMMGLL 300
  301 LPLTYAMKRH KWSVLKSRKL AYRPPK

Type	Start	End	Confidence
Cytoplasmic	1	59	0.74
Transmembrane Helix	60	83	0.79
Non-Cytoplasmic	84	288	0.94
Transmembrane Helix	289	307	0.60
Cytoplasmic	308	326	0.56