YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUF60_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATIALQV NGQQGGGSEP AAAAAAAAAA VVAAGDKWKP PQGTESIKME NGQSTGTKLG  60
   61 LPPLTPEQQE ALQKAKKYAM EQSIKSVLVK QTIAHQQQQL TNLQMAAVTM GFGDPLSPLQ 120
  121 SMAAQRQRAL AIMCRVYVGS IYYELGEDTI RQAFAPFGPI KSIDMSWDSV TMKHKGFAFV 180
  181 EYEVPEAAQL ALEQMNSVML GGRNIKVGRP SNIGQAQPII DQLAEEARAF NRIYVASVHQ 240
  241 DLSDDDIKSV FEAFGKIKSC TLARDPTTGK HKGYGFIEYE KAQSSQDAVS SMNLFDLGGQ 300
  301 YLRVGKAVTP PMPLLTPATP GGLPPAAAVA AAAATAKITA QEAVAGAAVL GTLATPGLVS 360
  361 PALTLAQPLG ALPQAVMAAQ APGVITGVTP ARPPIPVTIP SVGVVNPILA SPPTLGLLEP 420
  421 KKEKEEEELF PESERPEMLS EQEHMSISGS SARHMVMQKL LRKQESTVMV LRNMVDPKDI 480
  481 DDDLEGEVTE ECGKFGAVNR VIIYQEKQGE EEDAEIIVKI FVEFSMASET HKAIQALNGR 540
  541 WFGGRKVVAE VYDQERFDNS DLSA

Type	Start	End	Confidence
Signal Peptide	1	33	0.49
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	564	0.95