YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34866556, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFLERTYLV NDQATKMYAF TSDSRERGQK PVNKDQCPGD GPERPEAGAI YHCHNSFKAT  60
   61 GNRSSKQVHA KWRLCAASAI CFFFMVAEVV GGHVAGSLAV LTDAAHLLID LTSFLLSLFS 120
  121 LWLSSRPPSK RLTFGWYRAE ILGALLSVLC IWVVTGVLVY LACERLLYPD YQIQAGIMIT 180
  181 VSGCAVAANI VLTLILHQRH LGHNHKDAQA NASVRAAFVH ALGDVFQSTS VLISALIIYF 240
  241 KPDYKMADPV CTFISSVLAL ASTVMILKDF SILLMEGVPK GLSYNSVKEL LLTVDGVISV 300
  301 HNLHIWSLTV NQVILSVHVA TAASQDSQSV RTGIACALSS SFDLHSLTIQ IESAADQDPS 360
  361 CLLCEDPQD

Type	Start	End	Confidence
Cytoplasmic	1	71	0.99
Transmembrane Helix	72	95	0.88
Non-Cytoplasmic	96	103	0.80
Transmembrane Helix	104	123	0.95
Cytoplasmic	124	140	0.85
Transmembrane Helix	141	162	0.91
Non-Cytoplasmic	163	174	0.83
Transmembrane Helix	175	196	0.96
Cytoplasmic	197	216	0.94
Transmembrane Helix	217	239	0.90
Non-Cytoplasmic	240	245	0.85
Transmembrane Helix	246	267	0.84
Cytoplasmic	268	369	0.84