YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34865533, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLDSEPGS VLNAVSTAFN DTVEFYRWTW SIADKRVEDW PLMQSPWPTL SISTLYLLFV  60
   61 WLGPKWMKDR EPFQMRLVLI IYNFGMVLLN LFIFRELFMG SYNAGYSYIC QSVDYSNDVN 120
  121 EVRIAAALWW YFVSKGVEYL DTVFFILRKK NNQVSFLHVY HHCTMFTLWW IGIKWVAGGQ 180
  181 AFFGAQMNSF IHVIMYSYYG LTAFGPWIQK YLWWKRYLTM LQLVQFHVTI GHTALSLYTD 240
  241 CPFPKWMHWA LIAYAISFIF LFLNFYTRTY NEPKKSKTGK TATNGISANG VNKSEKQLVL 300
  301 ENGKPQKNGK PKGE

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.65
Transmembrane Helix	46	64	0.84
Cytoplasmic	65	74	0.65
Transmembrane Helix	75	98	0.83
Non-Cytoplasmic	99	126	0.72
Transmembrane Helix	127	147	0.60
Cytoplasmic	148	155	0.80
Transmembrane Helix	156	177	0.78
Non-Cytoplasmic	178	188	0.66
Transmembrane Helix	189	208	0.84
Cytoplasmic	209	217	0.73
Transmembrane Helix	218	238	0.85
Non-Cytoplasmic	239	245	0.85
Transmembrane Helix	246	267	0.91
Cytoplasmic	268	314	0.98