YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RCAS1_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITQFRLFK VCTCLATVLS FLKRLICRSG RGRKLSGDQI TLPTTVDYSS VPKQTDVEEW  60
   61 TSWDEDAPTS VKIEGGTGNA AAQQNSLEQL EPDYFKDMTP TIRKTQKIVI KKREPLSFGV 120
  121 PDGSTGFSSR LAATQDMPFI HQSSELGDLD TWQENSNAWE EEEDAAWQAE EVLRQQKIAD 180
  181 REKRAAEQQR KKMEKEAQRL LKKEQNKMGV KLS

Type	Start	End	Confidence
Signal Peptide	1	29	0.83
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	213	0.96