YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHPT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGAGARPA PRWVKALGEP LSAAQLRRLE DHRYSAAGES LFEPPLQLFW TWLLQWIPLW  60
   61 IAPNTITLFG LAINLFTTLV LIFYCPTVTE EAPYWTYLLC ALGLFIYQSL DAIDGKQARR 120
  121 TNSCSPLGEL FDHGCDSLST VFMAIGASIA VRLGTHPDWL FFCSFVGMFM FYCAHWQTYV 180
  181 SGVLRFGRVD VTEIQVALVI VFLLSTFGGA MMWDYTIPIL EIKLKILPVL GVVGGLIFSC 240
  241 SNYFHVILHG GVGKNGSTIA GTSVLSPGLH IGLIIILAIM IYKKSATNVF EKHPCLYTLM 300
  301 FGCVFAKVAQ KLVIAHMTKS ELYLQDTVFI GPGLLFLDQY FNNFIDEYVV LWIAMVITSF 360
  361 DMMIYFSSLC LQISRHLHLS IFKTSYQQAP EQVHKHID

Type	Start	End	Confidence
Cytoplasmic	1	59	0.78
Transmembrane Helix	60	85	0.82
Non-Cytoplasmic	86	92	0.66
Transmembrane Helix	93	110	0.87
Cytoplasmic	111	158	0.69
Transmembrane Helix	159	179	0.89
Non-Cytoplasmic	180	193	0.88
Transmembrane Helix	194	217	0.88
Cytoplasmic	218	225	0.85
Transmembrane Helix	226	247	0.94
Non-Cytoplasmic	248	258	0.80
Transmembrane Helix	259	282	0.88
Cytoplasmic	283	294	0.83
Transmembrane Helix	295	314	0.72
Non-Cytoplasmic	315	348	0.72
Transmembrane Helix	349	371	0.89
Cytoplasmic	372	398	0.89