YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCN4B_RAT
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRAGNRGNT QARWLGIGLL GLFLLPMYLS LEVSVGKATT IYAINGSAIL LPCTFSSCYG  60
   61 FENLYFRWSY NNSETSRILI DGIVKNDKSD PKVRVKDDDR ITLEGSTKEK MNNISILLSD 120
  121 LEFSDTGRYT CFVRNPKEKD LNNSATIFLQ VVDKLEEVDN TVTLIILAVV GGVIGLLVCI 180
  181 LLLKKLITFI LKKTREKKKE CLVSSSGNDN TENGLPGSKA EEKPPTKV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.61
Transmembrane Helix	12	31	0.86
Non-Cytoplasmic	32	161	0.60
Transmembrane Helix	162	183	0.90
Cytoplasmic	184	228	0.65