YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157817091, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQARGAVGG RGCALFPLLS ILVVQGVRIV LSLEISADAH VRGYVGEKIK LKCTFKSSSD  60
   61 VTDKLTIDWT YRPPSSSRTE SIFHYQSFQY PTTAGTFRDR ISWAGNVYKG DASISISNPT 120
  121 LKDNGTFSCA VKNPPDVYHN IPLTELTVTE RGFGTMLSSV ALLSILVFVP SAVVVILLLV 180
  181 RMGRKATGVT KRSRSSYKKS SIEVSDDTDQ EDSNDCMSRL CVRCAECLDS DYEEAY

Type	Start	End	Confidence
Signal Peptide	1	26	0.54
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	159	0.95
Transmembrane Helix	160	180	0.93
Cytoplasmic	181	236	0.95