YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109484595, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQWNAFWSIL GLSLLAVGTC QEDIEDTVTD DGAQKQYEVS ISGTSVELTC PLENEDNLKW  60
   61 EKNDKVLPDK NEKHLVLEDF SEVKDSGYYV CYTESSRKNT YLYLKARVCE NCMEVDLTAV 120
  121 SIIIIVDICI TLGLLMVVYY WSKKRKAKAK PVTRGTGTGG RPRGQNKERP PPVPNPDYEP 180
  181 IRKGQRDLYS GLNQRAV

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	119	0.98
Transmembrane Helix	120	141	0.80
Cytoplasmic	142	197	0.85