YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27717669, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISTWSTLV TPESCHRLAA SGHSLLIVLH YNHSGRLASR GGPEDNGGLG MLRGPSVAAG  60
   61 CLVVLENAMV LAAIAIHMRS RRWVYYCLLN ITLSDLLTGL AYVVNVLLSG TRTFQLSPVH 120
  121 WFLREGLLFM ALAASTFSLL FTAGERFATM VRVAESGATK TSRVYGCIGL CWLLAATLGL 180
  181 LPLLGWNCVC AFQRCSSLLP LYSKGYVLFC VVVFALILVT ILSLYGAIFR VVRANGQKSP 240
  241 RPPARRKSRR LLNTVLMILV AFVVCWGPLF GLLLADIFGS NVWAQEYLRG MDWILALAVL 300
  301 NSAINPLIYS FRSREVQHAV LTFLCCGCLR LGLRGPGDCL TRITEAHSGA STTDSSLRPR 360
  361 DSFRTSRSLS FKMREPLSSV SSIRSA

Type	Start	End	Confidence
Cytoplasmic	1	13	0.68
Transmembrane Helix	14	33	0.58
Non-Cytoplasmic	34	55	0.82
Transmembrane Helix	56	76	0.87
Cytoplasmic	77	83	0.86
Transmembrane Helix	84	106	0.88
Non-Cytoplasmic	107	125	0.80
Transmembrane Helix	126	144	0.94
Cytoplasmic	145	163	0.89
Transmembrane Helix	164	184	0.94
Non-Cytoplasmic	185	205	0.89
Transmembrane Helix	206	229	0.94
Cytoplasmic	230	250	0.92
Transmembrane Helix	251	274	0.91
Non-Cytoplasmic	275	290	0.89
Transmembrane Helix	291	311	0.87
Cytoplasmic	312	386	0.90