YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCATL_RAT
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDFLAGCA GGVAGVIVGH PFDTVKVRLQ VQNTEKPQYR GTLHCFQSII KQESVLGLYK  60
   61 GLGSPLMGLT FINALVFGVQ GNTLRALGQD SPLNQFLAGA AAGAIQCVIC CPMELAKTRL 120
  121 QLQAAGPARA YKGSLDCLVQ IYRHEGLRGI NRGMVSTLLR ETPSFGVYFL TYDVLTRAMG 180
  181 CEPGDRLLVP KLLLAGGTSG ITSWLSTYPM DVVKSRLQAD GLQGTPRYRG IVDCMRQSYQ 240
  241 AEGWQVFTRG LASTLLRAFP VNAATFATVT VVLTYIRGEE DQVDSEAAPG ASTTPAGPAL 300
  301 AQPSSL

Type	Start	End	Confidence
Cytoplasmic	1	55	0.79
Transmembrane Helix	56	79	0.71
Non-Cytoplasmic	80	95	0.81
Transmembrane Helix	96	116	0.69
Cytoplasmic	117	306	0.58