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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149025439, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSPALQPLS MAGLQLMTPA SSPMGPFFGL PWQQEAIHDN IYTPRKYQVE LLEAALDHNT  60
   61 IVCLNTGSGK TFIAVLLTKE LAHQIRGDLS PHAKRTVFLV NSANQVAQQV SAVRTHSDLK 120
  121 VGEYSNLEVN ASWTKERWSQ EFTKHQVLIM TCYVALNVLK NGYLSLSDIN LLVFDECHLA 180
  181 ILDHPYREIM KLCDSCPSCP RILGLTASIL NGKCDPDELE EKIQKLEKIL KSGAETATDL 240
  241 VVLDRYTSQP CEIVVDCGPF TDRSGLYERL LMELEEALDF INDCNVSVHS KERDSTLISK 300
  301 QILSDCRAVL VVLGPWCADK VAGMMVRELQ KYIKHEQEEL HRKFLLFTDT LLRKIHALCE 360
  361 EYFSPASLDL KYVTPKVMKL LEILRKYKPY ERQQFESVEW YNNRNQDNYV SWSDSEDDDD 420
  421 DEEIEEKEKP ETNFPSPFTN ILCGIIFVER RYTAVVLNRL IKEAGKQDPE LAYISSNFIT 480
  481 GHGIGKNQPR SKQMEAEFRK QEEVLRKFRA HETNLLIATS VVEEGVDIPK CNLVVRFDLP 540
  541 TEYRSYVQSK GRARAPISNY VMLADTDKIK SFEEDLKTYK AIEKILRNKC SKSVDGAEAD 600
  601 VHAVVDDDDV FPPYVLRPDD GGPRVTINTA IGHINRYCAR LPSDPFTHLA PKCRTRELPD 660
  661 GTFYSTLYLP INSPLRASIV GPPMGCVRLA ERVVALICCE KLHKIGELDE HLMPVGKETV 720
  721 KYEEELDLHD EEETSVPGRP GSTKRRQCYP KAIPECLRES YPKPDQPCYL YVIGMVLTTP 780
  781 LPDELNFRRR KLYPPEDTTR CFGILTAKPI PQIPHFPVYT RSGEVTISIE LKKSGFTLSQ 840
  841 QMLELVTRLH QYIFSHILRL EKPALEFQPA GAESAYCVLP LNVVNDSSTL DIDFKFMEDI 900
  901 EKSEARIGIP STKYSKETPF VFKLEDYQDA VIIPRYRNFD QPHRFYVADV YTDLTPLSKF 960
  961 PSPEYETFAE YYKTKYNLDL TNLNQPLLDV DHTSSRLNLL TPRHLNQKGK ALPLSSAEKR1020
 1021 KAKWESLQNK QILVPELCAI HPIPASLWRK AVCLPSILYR LHCLLTAEEL RAQTASDAGV1080
 1081 GVRSLPADFR YPNLDFGWKK SIDSKSFIST CNSSLAESDN YCKHSTTVVP ENAAHQGATR1140
 1141 PSLENHDQMS VNCKRLPAES PAKLQSEVSV DLTAINGLSY NKSLANGSYD LVNRDFCQGN1200
 1201 QLTYFKQEIP VQPTTSYPIQ NLYNYENQPT PSNECPLLSN KYLDGNANTS TSDGSPAGSP1260
 1261 RPAMMTAVEA LEGRTDSEQS PSVGHSSRTL GPNPGLILQA LTLSNASDGF NLERLEMLGD1320
 1321 SFLKHAITTY LFCTYPDAHE GRLSYMRSKK VSNCNLYRLG KKQGLPSRMV VSIFDPPVNW1380
 1381 LPPGYVVNQD KSNSEKWEKD EMTKDCLLAN GKLGEDCEEE EEEELAWRAP KEEAEYEDDL1440
 1441 LEYDQEHIQF IDSMLMGSGA FVKKIPLSPF STSDSAYEWK MPKKASLGSV PFSSDLEDFD1500
 1501 YSSWDAMCYL DPSKAVEEDD FVVGFWNPSE ENCGVDTGKQ SISYDLHTEQ CIADKSIADC1560
 1561 VEALLGCYLT SCGERAAQLF LCSLGLKVLP VIKRTSRDKA SYPAQENSSS QQKSPSGSCA1620
 1621 AAVSPRSSAG KDLEYGCLKI PPRCMFDHPD AEKTLNHLIS GFENFEKKIN YIFKNKAYLL1680
 1681 QAFTHASYHY NTITDCYQRL EFLGDAILDY LITKHLYEDP RQHSPGVLTD LRSALVNNTI1740
 1741 FASLAVKYDY HKYFKAVSPE LFHVIDDFVQ FQLEKNEMQG MDSELRRSEE DEEKEEDIEV1800
 1801 PKAMGDIFES LAGAIYMDSG MSLEVVWQVY YPMMRPLIEK FSANVPRSPV RELLEMEPET1860
 1861 AKFSPAERTY DGKVRVTVEV VGKGKFKGVG RSYRIAKSAA ARRALRSLKA NQPLVPNS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle