YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RT15_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRAAWRALS SVRVQAVTQA PVPALRARSS ASLPSARCGL QTPSLLNAAR AYAVQKPVQA  60
   61 KQDDEPASST FIKEYKNIIP NMEKVDDVVK RILSLEMASR KEKLKIKREQ LMNKIAENPE 120
  121 DYRTLEARIV ALTVKIRNYE EHMQKHRKDK VHKRHLLMSI DQRKKFLRLL RQTNYDVFEK 180
  181 TCKELGVEYA LPPLHFQRVH RRFLAKKALC IQVFQEVQKL KKQRMALKAA AAAAKKEKRE 240
  241 RVPENPSNAL PEKTKEN

Type	Start	End	Confidence
Signal Peptide	1	24	0.71
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	257	0.98