YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLD19_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSGLQLLG YFLALGGWVG IIASTALPQW KQSSYAGDAI ITAVGLYEGL WMSCASQSTG  60
   61 QVQCKLYDSL LALDGHIQSA RALMVVAVLL GFVAMVLSVV GMKCTRVGDS NPTAKGRVAI 120
  121 SGGALFLLAG LCTLTAVSWY ATLVTQEFFN PSTPVNARYE FGPALFVGWA SAGLAILGGS 180
  181 FLCCTCPEPE RANSIPQPYR SGPSTAAREP VVKLSTSVKG PLGV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.74
Transmembrane Helix	8	27	0.96
Non-Cytoplasmic	28	79	0.85
Transmembrane Helix	80	102	0.91
Cytoplasmic	103	117	0.93
Transmembrane Helix	118	143	0.86
Non-Cytoplasmic	144	163	0.93
Transmembrane Helix	164	185	0.92
Cytoplasmic	186	224	0.97