YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NSDHL_RAT
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQAVRSESK KGQVTGTDLI NEVSKAKKCT VIGGSGFLGQ HMVEQLLSRG YAVNVFDVRQ  60
   61 GFDNPRVQFF IGDLCNQQDL YPALKGVSTV FHCASPPSNS NNKELFYRVN STGTKTVIET 120
  121 CKEAGVQKLI LTSSASVVFE GVDIKNGTED LPYAMKPIDY YTETKILQER AVLDANDPKK 180
  181 NFLTAAIRPH GIFGPRDPQL VPVLIDAARK GKMKFMIGNG KNLVDFTFVE NVVHGHILAA 240
  241 EHLSRDAGLG GKAFHITNDE PIPFWTFLSR ILTGLNYEAP KYHIPYRVAY YLAFLLSLLV 300
  301 MVLSPLIQIQ TTFTPFRVAL AGTFHYYSCE KAKKLIGYRP LVTMDDAVER TVQSFHHLRK 360
  361 DK

Type	Start	End	Confidence
Cytoplasmic	1	287	0.78
Transmembrane Helix	288	307	0.88
Non-Cytoplasmic	308	362	0.80