YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109512333, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMKLLSGDT PLVCELALRP LALVFWSILG ARALDNGLAR TPTMGWLHWE RFMCNLDCQE  60
   61 EPDACISEQL FMQMAELMVS DGWRDAGYEY LCIDDCWMAP ERDSKGRLQA DPKRFPSGIK 120
  121 HLANYVHSKG LKLGIYADVG KKTCAGFPGS FGSYDIDAQT FADWGIDLLK FDGCHCDSVV 180
  181 SLANGYKYMS LALNRTGRSI VYSCEWPLYL RPFHKPNYTD IQYYCNHWRN FDDVYDSWES 240
  241 IKSILAWTVT HQKDIVEVAG PGGWNDPDML VIGNFGLSWD QQVTQMALWA IMAAPLLMSN 300
  301 DLRQISSQAK ALLQNEDVIA INQDPLGKQG YCFRKENEIE VWERPLSNLA WAVAVRNLQE 360
  361 IGGPRFYTIQ ISSLGRGLAC NPGCIITQIL PEKVHLGFYE WPLTLKTRIN PSGTVLLRLE 420
  421 R

Type	Start	End	Confidence
Signal Peptide	1	33	0.60
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	421	0.97